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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
107
total RNA-seq
84
ATAC-seq
66
ChIP-seq
4
Hi-C
4
pCHi-C
3
CRISPR genome editing followed by DNA sequencing
2
DNase-seq
2
HiChIP
2
snATAC-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
FAIRE-seq
1
single cell RNA-seq
Assay category
108
Transcription
89
DNA accessibility
66
DNA binding
4
3D chromatin structure
Target of assay
39
control
27
histone
27
histone modification
22
narrow histone mark
5
broad histone mark
Date released
214
August, 2021
200
May, 2022
170
February, 2023
162
August, 2017
147
February, 2021
134
May, 2020
126
November, 2017
123
May, 2021
107
October, 2019
56
September, 2020
48
March, 2020
47
September, 2023
29
July, 2019
29
October, 2018
25
February, 2020
24
May, 2019
19
April, 2020
17
December, 2017
16
April, 2019
16
January, 2021
10
November, 2020
9
November, 2018
9
October, 2017
8
February, 2018
8
January, 2018
8
June, 2019
5
December, 2018
5
December, 2019
4
January, 2019
4
July, 2018
4
March, 2023
4
November, 2019
4
October, 2022
4
September, 2017
3
March, 2019
3
May, 2023
1
August, 2018
1
August, 2022
1
September, 2018
Available data
76
fastq
46
bam
31
bed narrowPeak
16
tsv
10
bed bed3
9
bigWig
9
tagAlign
7
txt
4
bed bed3+
4
bigBed narrowPeak
4
hic
3
bed bedgraph
3
bedpe bed3+
2
bed broadPeak
2
bigBed broadPeak
1
tar
Organism
276
Homo sapiens
Biosample type
141
tissue
100
primary cell
20
in vitro differentiated cells
16
cell line
Organ
66
pancreas
64
epithelium
52
eye
18
connective tissue
17
limb
14
blood vessel
14
vasculature
11
nerve
9
brain
9
vein
8
bone element
8
kidney
8
skeleton
5
artery
4
gonad
4
ovary
2
adipose tissue
2
heart
1
lymph node
1
pituitary gland
1
skin of body
Project
178
AMP
76
HPAP
23
T1D
Genome assembly (visualization)
262
hg19
GRCh38
Lab
175
AMP-T2D consortium
76
Klaus Kaestner, Upenn
23
Kyle Gaulton, UCSD
3
Struan F.A. Grant, CHOP
Audit category:
16
inconsistent ontology term
1
audit script error
assembly!
GRCh38
BIOSAMPLE
ASSAY
277 results
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Clear Filters
total RNA-seq
ATAC-seq
ChIP-seq
Hi-C
pCHi-C
CRISPR genome editing followed by DNA sequencing
DNase-seq
HiChIP
snATAC-seq
CRISPR genome editing followed by sgRNA sequencing
FAIRE-seq
single cell RNA-seq
tissue
islet of Langerhans
19
24
21
4
2
retina
2
15
pigmented layer of retina
2
12
tibial nerve
11
tibial artery
5
+ See 17 more…
primary cell
exocrine cell
39
pancreatic alpha cell
27
pancreatic beta cell
10
endothelial cell of umbilical vein
7
1
1
gabaergic neuron
3
+ See 6 more…
in vitro differentiated cells
chondrocyte
5
adipocyte
1
3
immature adipocyte
2
2
preadipocyte
1
1
Progenitor cell of Hypothalamus (neural progenitor cell)
1
+ See 4 more…
cell line
Panc1
7
EndoC_BH1
3
2
1
RCC 7860 HIF1a re-expression
1
RCC 7860 HIF2a over-expression
1
RCC 7860 vector
1
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