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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
68
ChIP-seq
16
ATAC-seq
14
total RNA-seq
6
Hi-C
4
pCHi-C
2
DNase-seq
1
FAIRE-seq
Assay category
68
DNA binding
19
DNA accessibility
14
Transcription
6
3D chromatin structure
Target of assay
41
control
27
histone
27
histone modification
22
narrow histone mark
5
broad histone mark
Date released
214
August, 2021
200
May, 2022
170
February, 2023
162
August, 2017
147
February, 2021
134
May, 2020
126
November, 2017
123
May, 2021
107
October, 2019
56
September, 2020
48
March, 2020
47
September, 2023
29
July, 2019
29
October, 2018
25
February, 2020
24
May, 2019
19
April, 2020
17
December, 2017
16
April, 2019
16
January, 2021
10
November, 2020
9
November, 2018
9
October, 2017
8
February, 2018
8
January, 2018
8
June, 2019
5
December, 2018
5
December, 2019
4
January, 2019
4
July, 2018
4
March, 2023
4
November, 2019
4
October, 2022
4
September, 2017
3
March, 2019
3
May, 2023
1
August, 2018
1
August, 2022
1
September, 2018
Available data
48
bam
9
tagAlign
6
bigWig
6
hic
5
bedpe bed3+
4
bigBed narrowPeak
2
bed broadPeak
2
bigBed broadPeak
1
bed narrowPeak
1
tar
Organism
111
Homo sapiens
Biosample type
82
tissue
13
cell line
12
primary cell
4
in vitro differentiated cells
Organ
21
eye
17
limb
15
epithelium
14
blood vessel
14
pancreas
14
vasculature
11
nerve
9
vein
8
brain
8
kidney
5
artery
4
connective tissue
4
gonad
4
ovary
1
adipose tissue
1
heart
1
lymph node
1
pituitary gland
1
skin of body
Project
111
AMP
Genome assembly (visualization)
276
hg19
GRCh38
Lab
111
AMP-T2D consortium
Audit category:
8
inconsistent ontology term
1
audit script error
assembly!
GRCh38
BIOSAMPLE
ASSAY
111 results
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Clear Filters
ChIP-seq
ATAC-seq
total RNA-seq
Hi-C
pCHi-C
DNase-seq
FAIRE-seq
tissue
islet of Langerhans
21
13
14
1
4
tibial nerve
11
tibial artery
5
kidney
2
adipose tissue
1
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cell line
Panc1
7
EndoC_BH1
2
1
RCC 7860 HIF1a re-expression
1
RCC 7860 HIF2a over-expression
1
RCC 7860 vector
1
primary cell
endothelial cell of umbilical vein
7
1
1
epithelial cell of proximal tubule
1
kidney glomerular epithelial cell
1
kidney tubule cell
1
in vitro differentiated cells
adipocyte
2
cardiac precursors (cardiac muscle cell)
1
cardiomyocytes (cardiac muscle cell)
1
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