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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
129
single cell RNA-seq
99
total RNA-seq
50
ATAC-seq
49
snATAC-seq
41
WGBS
17
pCHi-C
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
232
Transcription
99
DNA accessibility
41
DNA methylation
Date released
134
May, 2022
99
February, 2023
56
September, 2020
47
September, 2023
February, 2021
19
April, 2020
17
May, 2021
16
January, 2021
4
March, 2023
2
March, 2020
Available data
153
zippedFastqFolder
114
fastq
3
bedpe bed3+
3
cool
hic
Organism
389
Homo sapiens
Biosample type
290
primary cell
95
tissue
7
cell line
2
stem cell
Organ
161
pancreas
133
epithelium
47
kidney
19
lung
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
AMP
266
HPAP
58
T1D
47
KPMP
19
LungMap
4
community
Genome assembly (visualization)
GRCh38
186
hg19
Lab
266
Klaus Kaestner, Upenn
56
Kyle Gaulton, UCSD
47
KPMP
19
Xin Sun, UCSD
4
Anna Gloyn, Oxford
2
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
assembly!
GRCh38
organ_slims!
adipose tissue
award.project!
AMP
files.file_type!
hic
month_released!
February, 2021
BIOSAMPLE
ASSAY
394 results
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Clear Filters
single cell RNA-seq
total RNA-seq
ATAC-seq
snATAC-seq
WGBS
pCHi-C
CRISPR genome editing followed by DNA sequencing
HiChIP
CRISPR RNA-seq
CRISPRi RNA-seq
shRNA RNA-seq
siRNA RNA-seq
primary cell
Langerhans cell
73
21
pancreatic alpha cell
42
22
25
pancreatic beta cell
11
13
16
exocrine cell
39
peripheral blood mononuclear cell
8
+ See 16 more…
tissue
kidney
47
islet of Langerhans
7
11
6
lung
9
10
pancreas
4
thymus
1
cell line
EndoC_BH1
3
2
EndoC-BH1
1
1
stem cell
SB Ad3.1
1
1
See all biosamples
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