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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
151
ATAC-seq
97
total RNA-seq
87
single cell RNA-seq
ChIP-seq
56
snATAC-seq
47
WGBS
17
pCHi-C
10
RRBS
9
Hi-C
4
DNase-seq
1
DNAme array
1
FAIRE-seq
Assay category
212
DNA accessibility
184
Transcription
58
DNA methylation
9
3D chromatin structure
Date released
134
May, 2022
102
May, 2020
88
February, 2023
56
September, 2020
46
February, 2021
20
May, 2021
13
July, 2019
8
January, 2021
4
October, 2019
3
August, 2017
3
October, 2022
1
March, 2020
1
November, 2018
1
September, 2018
Available data
163
fastq
153
zippedFastqFolder
54
bigWig
49
bam
18
tsv
10
bed bedMethyl
10
bigBed bedMethyl
7
bed bed3+
5
hic
4
bedpe bed3+
4
hdf5
3
bed narrowPeak
3
bigBed narrowPeak
3
cool
2
csv
1
bed broadPeak
1
bigBed broadPeak
1
tar
Organism
480
Homo sapiens
Biosample type
590
tissue
480
primary cell
60
cell line
50
in vitro differentiated cells
7
stem cell
Organ
155
epithelium
142
pancreas
8
blood
8
bodily fluid
6
vasculature
5
blood vessel
5
kidney
4
brain
4
connective tissue
3
vein
2
liver
1
bone element
1
bone marrow
1
eye
1
heart
1
musculature of body
Project
314
HPAP
142
AMP
24
T1D
Genome assembly (visualization)
379
hg19
GRCh38
Lab
314
Klaus Kaestner, Upenn
140
AMP-T2D consortium
26
Kyle Gaulton, UCSD
Audit category:
31
audit script error
13
inconsistent ontology term
assembly!
GRCh38
organ_slims!
adipose tissue
assay_title!
ChIP-seq
BIOSAMPLE
ASSAY
480 results
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ATAC-seq
total RNA-seq
single cell RNA-seq
snATAC-seq
WGBS
pCHi-C
RRBS
Hi-C
DNase-seq
DNAme array
FAIRE-seq
primary cell
Langerhans cell
85
48
pancreatic alpha cell
22
42
31
1
pancreatic beta cell
13
11
16
1
exocrine cell
39
naive thymus-derived CD4-positive, alpha-beta T cell
22
1
1
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