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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
26
ChIP-seq
single cell RNA-seq
5
Hi-C
3
total RNA-seq
1
FAIRE-seq
1
WGBS
1
pCHi-C
Assay category
26
DNA binding
5
3D chromatin structure
3
Transcription
1
DNA accessibility
1
DNA methylation
Target of assay
21
control
5
histone
5
histone modification
4
broad histone mark
1
narrow histone mark
Date released
14
October, 2019
11
May, 2019
3
February, 2020
3
July, 2019
3
March, 2020
2
February, 2021
1
November, 2017
Available data
28
bam
6
bigWig
4
tsv
3
hic
2
bed bed3+
2
bed broadPeak
2
bedpe bed3+
2
bigBed broadPeak
2
hdf5
2
tagAlign
1
bed narrowPeak
1
bigBed narrowPeak
1
fastq
1
tar
Organism
37
Homo sapiens
Biosample type
22
tissue
13
primary cell
2
cell line
Organ
311
pancreas
259
liver
230
epithelium
118
connective tissue
93
bone element
85
kidney
69
brain
67
adipose tissue
55
eye
42
musculature of body
39
vasculature
37
blood vessel
34
heart
26
limb
15
blood
15
bodily fluid
12
nerve
11
artery
11
lung
10
vein
9
spleen
8
embryo
8
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
37
AMP
Genome assembly (visualization)
GRCh38
159
hg19
Lab
37
AMP-T2D consortium
Audit category:
1
audit script error
assembly!
GRCh38
organ_slims!
bone marrow
assay_title!
single cell RNA-seq
BIOSAMPLE
ASSAY
37 results
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ChIP-seq
Hi-C
total RNA-seq
FAIRE-seq
WGBS
pCHi-C
tissue
tibial artery
5
1
aorta
2
1
1
1
ascending aorta
3
1
thoracic aorta
4
coronary artery
2
1
primary cell
endothelial cell of umbilical vein
7
2
1
brain microvascular endothelial cell
1
1
endothelial cell of hepatic sinusoid
1
cell line
smooth muscle cell of the coronary artery
2
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