Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
26
ChIP-seq
6
Hi-C
6
total RNA-seq
5
ATAC-seq
5
RRBS
1
pCHi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
26
DNA binding
7
Transcription
6
3D chromatin structure
6
DNA accessibility
5
DNA methylation
Target of assay
20
histone
20
histone modification
12
broad histone mark
8
narrow histone mark
6
control
Date released
84
February, 2021
26
August, 2017
8
February, 2023
5
July, 2019
3
March, 2020
2
February, 2020
2
June, 2019
2
May, 2019
2
May, 2022
1
January, 2018
Available data
89
txt
15
bigWig
15
tagAlign
14
bed narrowPeak
13
bed broadPeak
4
bam
4
bed bed3
3
bed bedMethyl
3
bigBed bedMethyl
3
tsv
2
bedpe bed3+
2
fastq
2
hic
1
bed bed3+
1
bigBed narrowPeak
Organism
135
Homo sapiens
Biosample type
132
tissue
3
primary cell
Organ
311
pancreas
260
liver
230
epithelium
149
kidney
127
heart
118
connective tissue
93
bone element
69
brain
67
adipose tissue
55
eye
45
vasculature
43
blood vessel
43
musculature of body
26
limb
20
lung
15
blood
15
bodily fluid
13
artery
12
nerve
10
vein
9
spleen
8
embryo
8
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
135
AMP
Genome assembly (visualization)
143
hg19
GRCh38
Lab
135
AMP-T2D consortium
Audit category:
85
inconsistent ontology term
1
audit script error
assembly!
GRCh38
organ_slims!
bone marrow
BIOSAMPLE
ASSAY
135 results
search-icon
table-tab-icon
Clear Filters
RNA microarray
ChIP-seq
Hi-C
total RNA-seq
ATAC-seq
RRBS
pCHi-C
single cell RNA-seq
snATAC-seq
tissue
bone element
84
skeletal muscle tissue
22
1
4
1
1
gastrocnemius medialis
4
1
psoas muscle
2
1
acetabular part of hip bone
1
1
+ See 5 more…
primary cell
skeletal muscle cell
1
1
skeletal muscle satellite cell
1
See all biosamples
Download