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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
151
ATAC-seq
97
total RNA-seq
87
single cell RNA-seq
69
ChIP-seq
56
snATAC-seq
47
WGBS
15
pCHi-C
9
RRBS
8
Hi-C
4
DNase-seq
1
DNAme array
1
FAIRE-seq
Assay category
212
DNA accessibility
184
Transcription
69
DNA binding
57
DNA methylation
8
3D chromatin structure
Target of assay
39
histone
39
histone modification
29
control
26
broad histone mark
13
narrow histone mark
1
RNA binding protein
1
transcription factor
Date released
134
May, 2022
102
May, 2020
88
February, 2023
56
May, 2021
56
September, 2020
45
February, 2021
17
August, 2017
12
October, 2019
11
July, 2019
8
January, 2021
5
June, 2019
3
November, 2017
3
October, 2022
1
August, 2021
1
March, 2020
1
May, 2019
1
November, 2018
1
September, 2018
Available data
180
fastq
153
zippedFastqFolder
93
bigWig
80
bam
34
bed narrowPeak
18
tsv
9
bed bedMethyl
9
bigBed bedMethyl
5
bed bed3+
5
hic
4
bed broadPeak
4
bedpe bed3+
4
bigBed broadPeak
4
bigBed narrowPeak
3
cool
3
hdf5
2
csv
2
tagAlign
1
tar
Organism
545
Homo sapiens
Biosample type
851
tissue
545
primary cell
198
cell line
86
in vitro differentiated cells
6
stem cell
Organ
181
epithelium
154
pancreas
15
vasculature
13
blood vessel
10
vein
8
blood
8
bodily fluid
8
kidney
7
brain
connective tissue
3
heart
3
liver
3
musculature of body
2
eye
1
bone element
1
bone marrow
Project
314
HPAP
208
AMP
23
T1D
Genome assembly (visualization)
594
hg19
GRCh38
Lab
314
Klaus Kaestner, Upenn
173
AMP-T2D consortium
58
Kyle Gaulton, UCSD
Audit category:
31
audit script error
15
inconsistent ontology term
assembly!
GRCh38
organ_slims!
connective tissue
BIOSAMPLE
ASSAY
545 results
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Clear Filters
ATAC-seq
total RNA-seq
single cell RNA-seq
ChIP-seq
snATAC-seq
WGBS
pCHi-C
RRBS
Hi-C
DNase-seq
DNAme array
FAIRE-seq
primary cell
Langerhans cell
85
48
pancreatic alpha cell
22
42
6
31
1
pancreatic beta cell
13
11
6
16
1
exocrine cell
39
CD8-positive, alpha-beta T cell
2
2
33
1
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