Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
41
ChIP-seq
1
ATAC-seq
1
DNase-seq
1
FAIRE-seq
Assay category
41
DNA binding
3
DNA accessibility
Target of assay
25
histone
25
histone modification
16
transcription factor
15
broad histone mark
10
narrow histone mark
3
RNA binding protein
Date released
22
August, 2017
18
November, 2017
3
October, 2019
1
March, 2019
Available data
433
bam
407
fastq
239
bigWig
199
tsv
185
bed narrowPeak
161
txt
153
zippedFastqFolder
152
tagAlign
44
bigBed narrowPeak
40
bed broadPeak
23
bedpe bed3+
22
hic
19
bed bedMethyl
19
bigBed bedMethyl
18
bigBed broadPeak
15
bed bed3+
10
bed bed3
8
csv
7
bed bedgraph
4
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
vcf
Organism
44
Homo sapiens
Biosample type
22
tissue
17
cell line
5
primary cell
Organ
17
liver
13
musculature of body
7
pancreas
3
blood vessel
3
epithelium
3
vasculature
3
vein
1
adipose tissue
1
brain
1
connective tissue
Project
44
AMP
Genome assembly (visualization)
302
hg19
GRCh38
Lab
43
AMP-T2D consortium
1
Mark McCarthy, Oxford
Audit category:
2
inconsistent control read length
assembly!
GRCh38
organ_slims!
mammary gland
BIOSAMPLE
ASSAY
44 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
FAIRE-seq
tissue
skeletal muscle tissue
13
islet of Langerhans
6
1
cingulate gyrus
1
subcutaneous abdominal adipose tissue
1
cell line
HepG2
17
primary cell
endothelial cell of umbilical vein
2
1
skeletal muscle myoblast
1
1
Download