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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
44
ChIP-seq
12
total RNA-seq
2
ATAC-seq
2
pCHi-C
1
FAIRE-seq
1
RRBS
Assay category
44
DNA binding
12
Transcription
3
DNA accessibility
1
DNA methylation
Target of assay
25
control
19
histone
19
histone modification
10
narrow histone mark
9
broad histone mark
Date released
25
November, 2017
12
February, 2020
9
October, 2017
8
October, 2019
3
May, 2019
2
July, 2019
2
March, 2020
1
February, 2023
Available data
36
tagAlign
25
bam
14
tsv
3
fastq
2
bed narrowPeak
2
bigWig
1
bed bed3
1
bed bedMethyl
1
bed broadPeak
1
bigBed bedMethyl
1
bigBed narrowPeak
Organism
62
Homo sapiens
Biosample type
62
tissue
7
primary cell
Organ
134
kidney
123
liver
122
heart
119
pancreas
92
bone element
67
connective tissue
66
adipose tissue
62
brain
53
eye
40
musculature of body
28
blood vessel
28
vasculature
26
limb
20
lung
15
epithelium
12
nerve
11
artery
9
spleen
8
skeleton
5
gonad
ovary
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
62
AMP
Genome assembly (visualization)
GRCh38
143
hg19
Lab
62
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
1
missing controlled_by
assembly!
GRCh38
organ_slims!
ovary
BIOSAMPLE
ASSAY
62 results
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ChIP-seq
total RNA-seq
ATAC-seq
pCHi-C
FAIRE-seq
RRBS
tissue
brain
9
1
1
cingulate gyrus
8
layer of hippocampus
6
substantia nigra
4
1
caudate nucleus
3
1
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