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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
32
ATAC-seq
23
total RNA-seq
5
pCHi-C
3
ChIP-seq
1
RRBS
Assay category
32
DNA accessibility
23
Transcription
3
DNA binding
1
DNA methylation
Target of assay
2
histone
2
histone modification
2
narrow histone mark
1
control
Date released
84
February, 2021
39
February, 2023
21
October, 2019
1
February, 2020
1
July, 2019
1
June, 2019
1
May, 2021
Available data
88
txt
27
bed narrowPeak
5
tsv
4
bed bed3
1
bam
1
bed bedMethyl
1
bigBed bedMethyl
Organism
148
Homo sapiens
Biosample type
145
tissue
3
primary cell
Organ
311
pancreas
260
liver
230
epithelium
149
kidney
127
heart
118
connective tissue
93
bone element
69
brain
67
adipose tissue
55
eye
45
vasculature
43
blood vessel
43
musculature of body
26
limb
20
lung
15
blood
15
bodily fluid
13
artery
12
nerve
10
vein
9
spleen
8
embryo
8
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
urinary bladder
Project
147
AMP
1
T1D
Genome assembly (visualization)
104
hg19
GRCh38
Lab
147
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
84
inconsistent ontology term
assembly!
GRCh38
organ_slims!
urinary bladder
BIOSAMPLE
ASSAY
148 results
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RNA microarray
ATAC-seq
total RNA-seq
pCHi-C
ChIP-seq
RRBS
tissue
bone element
84
islet of Langerhans
1
14
4
2
retina
15
3
pigmented layer of retina
12
2
acetabular part of hip bone
1
1
+ See 3 more…
primary cell
retinal pigment epithelial cell
1
1
megakaryocyte
1
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