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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
93
single cell RNA-seq
21
ChIP-seq
3
Hi-C
3
pCHi-C
3
total RNA-seq
Assay category
96
Transcription
21
DNA binding
DNA methylation
3
3D chromatin structure
Target of assay
20
control
1
histone
1
histone modification
1
narrow histone mark
Date released
92
August, 2021
11
April, 2019
6
May, 2019
5
March, 2020
3
February, 2020
2
February, 2021
2
June, 2019
1
February, 2023
1
October, 2019
Available data
98
tsv
20
bam
3
bedpe bed3+
3
hic
2
tagAlign
1
bed narrowPeak
1
bigWig
Organism
123
Homo sapiens
Biosample type
119
tissue
2
cell line
2
primary cell
Organ
262
pancreas
254
liver
177
epithelium
145
kidney
123
heart
113
connective tissue
93
bone element
67
brain
63
adipose tissue
54
eye
43
vasculature
42
blood vessel
38
musculature of body
26
limb
20
lung
15
blood
15
bodily fluid
13
artery
12
nerve
10
vein
9
spleen
8
embryo
8
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
urinary bladder
Project
123
AMP
Genome assembly (visualization)
GRCh38
186
hg19
Lab
123
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
assembly!
GRCh38
organ_slims!
urinary bladder
assay_slims!
DNA methylation
BIOSAMPLE
ASSAY
123 results
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single cell RNA-seq
ChIP-seq
Hi-C
pCHi-C
total RNA-seq
tissue
heart left ventricle
18
7
1
1
heart right ventricle
17
2
1
1
right cardiac atrium
18
1
1
left cardiac atrium
18
aortic valve
4
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cell line
smooth muscle cell of the coronary artery
2
primary cell
cardiac fibroblast
2
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