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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
93
single cell RNA-seq
21
ChIP-seq
7
total RNA-seq
4
ATAC-seq
3
Hi-C
3
pCHi-C
2
RRBS
2
WGBS
Assay category
100
Transcription
21
DNA binding
4
DNA accessibility
4
DNA methylation
3
3D chromatin structure
Target of assay
20
control
1
histone
1
histone modification
1
narrow histone mark
Date released
92
August, 2021
11
April, 2019
9
February, 2023
6
May, 2019
5
March, 2020
4
July, 2019
3
February, 2020
2
February, 2021
2
June, 2019
1
October, 2019
Available data
98
tsv
20
bam
4
bed bed3
4
txt
3
bedpe bed3+
3
hic
2
bed bedMethyl
2
bigBed bedMethyl
2
tagAlign
1
bed narrowPeak
1
bigWig
Organism
135
Homo sapiens
Biosample type
130
tissue
3
primary cell
2
cell line
Organ
311
pancreas
260
liver
230
epithelium
149
kidney
127
heart
118
connective tissue
93
bone element
69
brain
67
adipose tissue
55
eye
45
vasculature
43
blood vessel
43
musculature of body
26
limb
20
lung
15
blood
15
bodily fluid
13
artery
12
nerve
10
vein
9
spleen
8
embryo
8
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
urinary bladder
Project
135
AMP
Genome assembly (visualization)
GRCh38
200
hg19
Lab
135
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
assembly!
GRCh38
organ_slims!
urinary bladder
BIOSAMPLE
ASSAY
135 results
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single cell RNA-seq
ChIP-seq
total RNA-seq
ATAC-seq
Hi-C
pCHi-C
RRBS
WGBS
tissue
heart left ventricle
18
7
1
1
1
2
heart right ventricle
17
2
1
1
right cardiac atrium
18
1
1
left cardiac atrium
18
aortic valve
4
+ See 14 more…
primary cell
cardiac fibroblast
2
1
cell line
smooth muscle cell of the coronary artery
2
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