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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
147
ChIP-seq
7
WGBS
6
RRBS
3
DNase-seq
2
Hi-C
1
FAIRE-seq
Assay category
147
DNA binding
13
DNA methylation
4
DNA accessibility
2
3D chromatin structure
Target of assay
96
histone
96
histone modification
60
broad histone mark
50
control
36
narrow histone mark
1
RNA binding protein
1
transcription factor
Date released
214
August, 2021
200
May, 2022
170
February, 2023
162
August, 2017
147
February, 2021
134
May, 2020
126
November, 2017
123
May, 2021
98
October, 2019
56
September, 2020
47
March, 2020
47
September, 2023
29
July, 2019
29
October, 2018
25
February, 2020
24
May, 2019
19
April, 2020
17
December, 2017
16
April, 2019
16
January, 2021
10
November, 2020
9
November, 2018
9
October, 2017
8
February, 2018
8
January, 2018
8
June, 2019
5
December, 2018
5
December, 2019
4
January, 2019
4
July, 2018
4
March, 2023
4
November, 2019
4
October, 2022
4
September, 2017
3
March, 2019
3
May, 2023
1
August, 2018
1
August, 2022
1
September, 2018
Available data
68
tagAlign
38
fastq
35
bam
25
bigWig
24
bed narrowPeak
22
bed broadPeak
4
bed bedMethyl
4
bigBed bedMethyl
4
bigBed narrowPeak
2
bedpe bed3+
2
bigBed broadPeak
2
hic
Organism
165
Homo sapiens
Biosample type
127
tissue
19
in vitro differentiated cells
17
primary cell
3
cell line
Organ
60
connective tissue
41
adipose tissue
40
pancreas
35
liver
26
musculature of body
15
epithelium
Project
166
AMP
Genome assembly (visualization)
335
hg19
GRCh38
Lab
166
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
assembly!
GRCh38
organ_slims!
vein
BIOSAMPLE
ASSAY
166 results
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ChIP-seq
WGBS
RRBS
DNase-seq
Hi-C
FAIRE-seq
tissue
subcutaneous abdominal adipose tissue
36
3
liver
30
3
1
skeletal muscle tissue
22
4
islet of Langerhans
21
1
1
adipose tissue
1
1
+ See 2 more…
in vitro differentiated cells
adipocyte
19
primary cell
pancreatic alpha cell
6
pancreatic beta cell
6
skeletal muscle myoblast
2
1
2
cell line
EndoC_BH1
2
1
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