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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
20
ChIP-seq
6
single cell RNA-seq
3
Hi-C
3
total RNA-seq
1
RRBS
1
WGBS
1
pCHi-C
Assay category
20
DNA binding
9
Transcription
3
3D chromatin structure
2
DNA methylation
Target of assay
20
control
Date released
11
May, 2019
6
August, 2021
5
October, 2019
4
July, 2019
3
February, 2020
2
February, 2021
2
March, 2020
2
November, 2017
Available data
21
bam
10
tsv
4
bigWig
2
bed bed3+
2
fastq
2
hdf5
2
tagAlign
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
hic
Organism
35
Homo sapiens
Biosample type
28
tissue
5
primary cell
2
cell line
Organ
311
pancreas
260
liver
230
epithelium
149
kidney
127
heart
118
connective tissue
93
bone element
69
brain
67
adipose tissue
55
eye
45
vasculature
43
blood vessel
43
musculature of body
26
limb
20
lung
15
blood
15
bodily fluid
13
artery
12
nerve
vein
9
spleen
8
embryo
8
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
35
AMP
Genome assembly (visualization)
GRCh38
148
hg19
Lab
35
AMP-T2D consortium
assembly!
GRCh38
organ_slims!
vein
BIOSAMPLE
ASSAY
35 results
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ChIP-seq
single cell RNA-seq
Hi-C
total RNA-seq
RRBS
WGBS
pCHi-C
tissue
aorta
2
4
1
1
1
tibial artery
5
1
ascending aorta
3
1
thoracic aorta
4
coronary artery
2
1
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primary cell
brain microvascular endothelial cell
1
1
choroid plexus epithelial cell
1
1
endothelial cell of hepatic sinusoid
1
cell line
smooth muscle cell of the coronary artery
2
See all biosamples
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