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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
20
ChIP-seq
6
single cell RNA-seq
3
total RNA-seq
1
Hi-C
1
RRBS
1
WGBS
1
pCHi-C
Assay category
20
DNA binding
9
Transcription
2
DNA methylation
1
3D chromatin structure
Target of assay
20
control
Date released
11
May, 2019
6
August, 2021
5
October, 2019
3
February, 2020
2
February, 2021
2
July, 2019
2
March, 2020
2
November, 2017
Available data
21
bam
10
tsv
4
bigWig
2
bed bed3+
2
fastq
hdf5
2
tagAlign
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
hic
Organism
33
Homo sapiens
Biosample type
28
tissue
3
primary cell
2
cell line
Organ
311
pancreas
259
liver
228
epithelium
149
kidney
127
heart
117
connective tissue
93
bone element
67
adipose tissue
66
brain
55
eye
43
musculature of body
43
vasculature
41
blood vessel
26
limb
20
lung
15
blood
15
bodily fluid
13
artery
12
nerve
vein
9
spleen
8
embryo
8
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
33
AMP
Genome assembly (visualization)
GRCh38
146
hg19
Lab
33
AMP-T2D consortium
assembly!
GRCh38
organ_slims!
vein
files.file_type!
hdf5
BIOSAMPLE
ASSAY
33 results
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ChIP-seq
single cell RNA-seq
total RNA-seq
Hi-C
RRBS
WGBS
pCHi-C
tissue
aorta
2
4
1
1
1
tibial artery
5
1
ascending aorta
3
1
thoracic aorta
4
coronary artery
2
1
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primary cell
choroid plexus epithelial cell
1
1
brain microvascular endothelial cell
1
cell line
smooth muscle cell of the coronary artery
2
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