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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
34
ChIP-seq
1
ATAC-seq
1
DNase-seq
Assay category
34
DNA binding
2
DNA accessibility
Target of assay
23
histone
23
histone modification
13
broad histone mark
13
transcription factor
10
narrow histone mark
RNA binding protein
Date released
21
August, 2017
14
November, 2017
1
March, 2019
Available data
417
bam
400
fastq
230
bigWig
200
tsv
178
bed narrowPeak
161
txt
153
zippedFastqFolder
152
tagAlign
38
bigBed narrowPeak
36
bed broadPeak
22
bedpe bed3+
20
hic
19
bed bedMethyl
19
bigBed bedMethyl
15
bed bed3+
14
bigBed broadPeak
10
bed bed3
8
csv
7
bed bedgraph
4
hdf5
3
cool
2
ibed
2
tar
1
bedpe
1
vcf
Organism
36
Homo sapiens
Biosample type
22
tissue
13
cell line
1
primary cell
Organ
13
liver
13
musculature of body
7
pancreas
2
blood vessel
2
epithelium
2
vasculature
vein
1
adipose tissue
1
brain
1
connective tissue
Project
36
AMP
Genome assembly (visualization)
285
hg19
GRCh38
Lab
35
AMP-T2D consortium
1
Mark McCarthy, Oxford
Audit category:
2
inconsistent control read length
assembly!
GRCh38
organ_slims!
vein
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
36 results
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ChIP-seq
ATAC-seq
DNase-seq
tissue
skeletal muscle tissue
13
islet of Langerhans
6
1
cingulate gyrus
1
subcutaneous abdominal adipose tissue
1
cell line
HepG2
13
primary cell
skeletal muscle myoblast
1
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