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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
55
ChIP-seq
4
WGBS
3
ATAC-seq
2
total RNA-seq
1
RNA microarray
1
pCHi-C
Assay category
55
DNA binding
4
DNA methylation
3
DNA accessibility
2
Transcription
Target of assay
31
histone
31
histone modification
24
control
20
broad histone mark
11
narrow histone mark
Date released
41
August, 2017
18
October, 2018
2
February, 2020
1
August, 2018
1
August, 2021
1
February, 2023
1
January, 2018
March, 2020
1
October, 2019
Available data
21
fastq
19
bam
8
tagAlign
3
bigWig
2
bed narrowPeak
2
tsv
1
bed broadPeak
1
bedpe bed3+
1
bigBed narrowPeak
Organism
65
Homo sapiens
Biosample type
65
tissue
1
in vitro differentiated cells
Organ
303
pancreas
258
liver
227
epithelium
147
kidney
122
heart
116
connective tissue
93
bone element
67
brain
66
adipose tissue
55
eye
42
vasculature
40
blood vessel
40
musculature of body
26
limb
19
lung
15
blood
15
bodily fluid
13
artery
12
nerve
9
vein
8
embryo
8
skeleton
8
spleen
4
gonad
4
ovary
1
bone marrow
1
lymph node
1
pericardium
1
pituitary gland
1
skin of body
1
spinal cord
1
thymus
Project
66
AMP
Genome assembly (visualization)
426
hg19
GRCh38
Lab
66
AMP-T2D consortium
assembly!
GRCh38
month_released!
March, 2020
BIOSAMPLE
ASSAY
66 results
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ChIP-seq
WGBS
ATAC-seq
total RNA-seq
RNA microarray
pCHi-C
tissue
subcutaneous abdominal adipose tissue
36
3
subcutaneous adipose tissue
10
1
1
omental fat pad
8
1
adipose tissue
1
1
3
in vitro differentiated cells
white fat cell
1
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