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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
13
ChIP-seq
8
snATAC-seq
2
Hi-C
1
ATAC-seq
1
FAIRE-seq
Assay category
13
DNA binding
10
DNA accessibility
2
3D chromatin structure
Target of assay
8
control
5
histone
5
histone modification
4
broad histone mark
1
narrow histone mark
Date released
9
October, 2019
8
January, 2021
3
January, 2019
3
November, 2018
1
January, 2018
1
March, 2020
Available data
14
bam
6
fastq
4
bigWig
2
bed broadPeak
2
bigBed broadPeak
2
hic
1
bed narrowPeak
1
bedpe bed3+
1
bigBed narrowPeak
1
tar
Organism
25
Homo sapiens
Biosample type
18
primary cell
7
cell line
Organ
311
pancreas
260
liver
230
epithelium
149
kidney
127
heart
118
connective tissue
93
bone element
69
brain
67
adipose tissue
55
eye
45
vasculature
43
blood vessel
43
musculature of body
26
limb
20
lung
15
blood
15
bodily fluid
13
artery
12
nerve
10
vein
9
spleen
8
embryo
8
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
17
AMP
8
T1D
Genome assembly (visualization)
72
hg19
GRCh38
Lab
17
AMP-T2D consortium
8
Kyle Gaulton, UCSD
Audit category:
1
audit script error
assembly!
GRCh38
BIOSAMPLE
ASSAY
25 results
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ChIP-seq
snATAC-seq
Hi-C
ATAC-seq
FAIRE-seq
primary cell
endothelial cell of umbilical vein
7
2
1
peripheral blood mononuclear cell
8
cell line
GM12878
6
1
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