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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
46
ChIP-seq
3
Hi-C
2
ATAC-seq
2
RRBS
2
pCHi-C
Assay category
46
DNA binding
3
3D chromatin structure
2
DNA accessibility
2
DNA methylation
Target of assay
28
control
18
histone
18
histone modification
9
broad histone mark
9
narrow histone mark
Date released
27
November, 2017
February, 2020
9
October, 2017
8
October, 2019
5
July, 2019
3
May, 2019
2
March, 2020
1
February, 2023
Available data
36
tagAlign
28
bam
8
bigWig
6
fastq
3
bed bed3+
3
hdf5
2
bed bedMethyl
bed narrowPeak
2
bigBed bedMethyl
2
tsv
1
bed bed3
1
bed broadPeak
1
bigBed narrowPeak
Organism
55
Homo sapiens
Biosample type
48
tissue
7
primary cell
Organ
284
pancreas
217
epithelium
185
liver
148
kidney
123
heart
112
connective tissue
93
bone element
63
adipose tissue
55
brain
41
vasculature
39
blood vessel
27
eye
27
musculature of body
22
limb
20
lung
15
blood
15
bodily fluid
11
artery
11
nerve
9
spleen
9
vein
8
embryo
8
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
55
AMP
Genome assembly (visualization)
23
hg19
GRCh38
Lab
55
AMP-T2D consortium
Audit category:
1
missing controlled_by
assembly!
GRCh38
files.file_type!
bed narrowPeak
month_released!
February, 2020
BIOSAMPLE
ASSAY
55 results
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ChIP-seq
Hi-C
ATAC-seq
RRBS
pCHi-C
tissue
brain
9
1
1
cingulate gyrus
7
layer of hippocampus
6
substantia nigra
4
caudate nucleus
3
+ See 13 more…
primary cell
astrocyte of the cerebellum
1
1
brain microvascular endothelial cell
1
1
choroid plexus epithelial cell
1
1
brain pericyte
1
See all biosamples
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