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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
46
ChIP-seq
12
total RNA-seq
10
snATAC-seq
9
single cell RNA-seq
3
Hi-C
3
pCHi-C
2
ATAC-seq
2
RRBS
Assay category
46
DNA binding
21
Transcription
12
DNA accessibility
3
3D chromatin structure
2
DNA methylation
Target of assay
28
control
18
histone
18
histone modification
9
broad histone mark
9
narrow histone mark
Date released
27
November, 2017
19
April, 2020
12
February, 2020
9
October, 2017
8
October, 2019
5
July, 2019
3
March, 2020
3
May, 2019
1
February, 2023
Available data
36
tagAlign
28
bam
15
tsv
8
bigWig
6
fastq
3
bed bed3+
3
hdf5
2
bed bedMethyl
bed narrowPeak
2
bigBed bedMethyl
1
bed bed3
1
bed broadPeak
1
bigBed narrowPeak
Organism
86
Homo sapiens
Biosample type
80
tissue
7
primary cell
Organ
285
pancreas
217
epithelium
186
liver
148
kidney
126
heart
114
connective tissue
93
bone element
67
brain
65
adipose tissue
44
vasculature
42
blood vessel
29
musculature of body
28
eye
25
limb
20
lung
15
blood
15
bodily fluid
13
artery
12
nerve
9
spleen
9
vein
8
embryo
8
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
68
AMP
19
LungMap
Genome assembly (visualization)
23
hg19
GRCh38
Lab
68
AMP-T2D consortium
19
Xin Sun, UCSD
Audit category:
1
inconsistent ontology term
Audit category:
1
missing controlled_by
assembly!
GRCh38
files.file_type!
bed narrowPeak
BIOSAMPLE
ASSAY
87 results
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ChIP-seq
total RNA-seq
snATAC-seq
single cell RNA-seq
Hi-C
pCHi-C
ATAC-seq
RRBS
tissue
lung
10
9
1
brain
9
1
1
cingulate gyrus
7
layer of hippocampus
6
substantia nigra
4
1
+ See 21 more…
primary cell
astrocyte of the cerebellum
1
1
brain microvascular endothelial cell
1
1
choroid plexus epithelial cell
1
1
brain pericyte
1
See all biosamples
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