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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
66
ChIP-seq
15
total RNA-seq
7
Hi-C
2
ATAC-seq
2
RRBS
2
pCHi-C
1
FAIRE-seq
Assay category
66
DNA binding
15
Transcription
7
3D chromatin structure
3
DNA accessibility
2
DNA methylation
Target of assay
45
control
21
histone
21
histone modification
12
narrow histone mark
9
broad histone mark
Date released
28
November, 2017
25
October, 2019
15
February, 2020
10
July, 2019
9
October, 2017
5
May, 2019
2
March, 2020
1
February, 2023
Available data
46
bam
36
tagAlign
17
tsv
9
bigWig
6
fastq
3
bed bed3+
3
bed narrowPeak
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
2
bigBed narrowPeak
1
bed bed3
1
bed broadPeak
Organism
95
Homo sapiens
Biosample type
88
tissue
7
primary cell
Organ
311
pancreas
260
liver
230
epithelium
149
kidney
127
heart
118
connective tissue
93
bone element
69
brain
67
adipose tissue
55
eye
45
vasculature
43
blood vessel
43
musculature of body
26
limb
20
lung
15
blood
15
bodily fluid
13
artery
12
nerve
10
vein
9
spleen
8
embryo
8
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
95
AMP
Genome assembly (visualization)
GRCh38
260
hg19
Lab
95
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
1
missing controlled_by
assembly!
GRCh38
BIOSAMPLE
ASSAY
95 results
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ChIP-seq
total RNA-seq
Hi-C
ATAC-seq
RRBS
pCHi-C
FAIRE-seq
tissue
tibial nerve
11
1
brain
9
1
1
cingulate gyrus
8
layer of hippocampus
6
tibial artery
5
1
+ See 24 more…
primary cell
astrocyte of the cerebellum
1
1
brain microvascular endothelial cell
1
1
choroid plexus epithelial cell
1
1
brain pericyte
1
See all biosamples
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