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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
48
ChIP-seq
total RNA-seq
3
Hi-C
2
ATAC-seq
2
RRBS
2
pCHi-C
1
FAIRE-seq
Assay category
48
DNA binding
3
3D chromatin structure
3
DNA accessibility
2
DNA methylation
Target of assay
28
control
20
histone
20
histone modification
11
narrow histone mark
9
broad histone mark
Date released
28
November, 2017
9
October, 2017
9
October, 2019
6
July, 2019
3
May, 2019
2
March, 2020
1
February, 2023
Available data
36
tagAlign
28
bam
8
bigWig
6
fastq
3
bed bed3+
3
hdf5
2
bed bedMethyl
2
bed narrowPeak
2
bigBed bedMethyl
2
tsv
1
bed bed3
1
bed broadPeak
1
bigBed narrowPeak
Organism
58
Homo sapiens
Biosample type
51
tissue
7
primary cell
Organ
238
pancreas
230
liver
175
epithelium
124
heart
112
connective tissue
100
kidney
89
bone element
65
adipose tissue
57
brain
42
vasculature
41
musculature of body
40
blood vessel
36
eye
23
limb
20
lung
15
blood
15
bodily fluid
11
artery
11
nerve
10
vein
9
spleen
8
embryo
5
gonad
5
ovary
4
skeleton
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
58
AMP
Genome assembly (visualization)
GRCh38
159
hg19
Lab
58
AMP-T2D consortium
Audit category:
1
missing controlled_by
assembly!
GRCh38
assay_title!
total RNA-seq
BIOSAMPLE
ASSAY
58 results
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ChIP-seq
Hi-C
ATAC-seq
RRBS
pCHi-C
FAIRE-seq
tissue
brain
9
1
1
cingulate gyrus
8
layer of hippocampus
6
substantia nigra
4
caudate nucleus
3
+ See 14 more…
primary cell
astrocyte of the cerebellum
1
1
brain microvascular endothelial cell
1
1
choroid plexus epithelial cell
1
1
brain pericyte
1
See all biosamples
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