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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
28
ChIP-seq
12
total RNA-seq
3
Hi-C
2
ATAC-seq
2
RRBS
2
pCHi-C
1
FAIRE-seq
Assay category
28
DNA binding
12
Transcription
3
3D chromatin structure
3
DNA accessibility
2
DNA methylation
Target of assay
28
control
histone
19
histone modification
10
narrow histone mark
9
broad histone mark
Date released
15
November, 2017
12
February, 2020
8
October, 2019
6
July, 2019
3
May, 2019
3
October, 2017
2
March, 2020
1
February, 2023
Available data
28
bam
19
tagAlign
14
tsv
7
bigWig
5
fastq
3
bed bed3+
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
bed narrowPeak
1
bigBed narrowPeak
Organism
50
Homo sapiens
Biosample type
43
tissue
7
primary cell
Organ
296
pancreas
227
liver
225
epithelium
149
kidney
126
heart
93
bone element
74
connective tissue
53
eye
50
brain
40
vasculature
38
blood vessel
36
adipose tissue
24
limb
23
musculature of body
20
lung
15
blood
15
bodily fluid
13
artery
12
nerve
9
spleen
8
skeleton
7
embryo
5
vein
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
50
AMP
Genome assembly (visualization)
GRCh38
47
hg19
Lab
50
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
assembly!
GRCh38
target.investigated_as!
histone
BIOSAMPLE
ASSAY
50 results
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ChIP-seq
total RNA-seq
Hi-C
ATAC-seq
RRBS
pCHi-C
FAIRE-seq
tissue
brain
3
1
1
caudate nucleus
2
1
cerebellum (Hemisphere)
2
1
layer of hippocampus
3
substantia nigra
2
1
+ See 20 more…
primary cell
astrocyte of the cerebellum
1
1
brain microvascular endothelial cell
1
1
choroid plexus epithelial cell
1
1
brain pericyte
1
See all biosamples
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