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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
69
ATAC-seq
55
total RNA-seq
47
WGBS
ChIP-seq
8
Hi-C
6
MeRIP-seq
6
RRBS
2
Capture-C
2
DNase-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
FAIRE-seq
1
RNA microarray
Assay category
72
DNA accessibility
55
Transcription
53
DNA methylation
8
3D chromatin structure
Target of assay
3
control
3
nucleotide modification
Date released
80
May, 2022
52
February, 2023
16
May, 2021
16
September, 2020
8
July, 2019
6
February, 2021
6
November, 2020
4
October, 2019
3
March, 2020
3
October, 2022
2
August, 2021
1
December, 2019
1
November, 2019
Available data
80
zippedFastqFolder
59
fastq
13
bed narrowPeak
10
tsv
6
bed bedMethyl
6
bigBed bedMethyl
6
hic
5
bedpe bed3+
5
bigWig
3
cool
2
bed bed3+
2
hdf5
1
bam
1
bigBed narrowPeak
1
tar
Organism
197
Homo sapiens
Biosample type
155
primary cell
28
cell line
15
tissue
Organ
250
pancreas
198
epithelium
136
kidney
106
heart
93
bone element
68
liver
52
eye
40
connective tissue
22
brain
20
lung
18
vasculature
17
blood vessel
17
musculature of body
12
adipose tissue
9
blood
9
bodily fluid
8
skeleton
7
limb
4
artery
3
vein
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
embryo
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
nerve
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
142
HPAP
56
AMP
Genome assembly (visualization)
210
hg19
GRCh38
Lab
142
Klaus Kaestner, Upenn
50
AMP-T2D consortium
6
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
28
inconsistent ontology term
5
audit script error
assembly!
GRCh38
assay_title!
ChIP-seq
BIOSAMPLE
ASSAY
198 results
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ATAC-seq
total RNA-seq
WGBS
Hi-C
MeRIP-seq
RRBS
Capture-C
DNase-seq
CRISPR genome editing followed by sgRNA sequencing
FAIRE-seq
RNA microarray
primary cell
pancreatic alpha cell
22
42
31
1
pancreatic beta cell
13
11
16
1
pancreatic acinar cell
4
1
endothelial cell of umbilical vein
2
1
brain microvascular endothelial cell
1
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cell line
EndoC_BH1
18
1
6
2
1
tissue
pigmented layer of retina
12
2
renal glomerulus
1
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