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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
119
ChIP-seq
9
total RNA-seq
3
Hi-C
2
STARR-seq
2
pCHi-C
1
RRBS
1
whole genome sequencing assay
Assay category
119
DNA binding
9
Transcription
3
3D chromatin structure
1
DNA methylation
1
DNA sequencing
Target of assay
62
control
52
transcription factor
7
RNA binding protein
5
histone
5
histone modification
3
narrow histone mark
2
broad histone mark
2
chromatin remodeller
1
recombinant protein
Date released
98
November, 2017
32
August, 2021
2
July, 2019
1
December, 2017
1
December, 2018
1
February, 2021
1
May, 2020
1
November, 2018
Available data
101
fastq
100
bam
66
bigWig
46
bed narrowPeak
32
bigBed narrowPeak
14
bed broadPeak
14
bigBed broadPeak
10
tsv
4
tagAlign
3
tar
2
bed bed3+
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
hdf5
1
hic
1
vcf
Organism
137
Homo sapiens
Biosample type
133
cell line
tissue
3
primary cell
1
in vitro differentiated cells
Organ
215
epithelium
192
pancreas
137
liver
51
connective tissue
17
vasculature
15
blood
15
blood vessel
15
bodily fluid
15
kidney
10
vein
8
embryo
7
brain
5
heart
3
musculature of body
2
artery
2
eye
1
adipose tissue
1
bone element
1
bone marrow
1
mammary gland
Project
137
AMP
Genome assembly (visualization)
357
hg19
GRCh38
Lab
106
AMP-T2D consortium
31
Bing Ren, UCSD
Audit category:
8
missing controlled_by
Audit category:
4
inconsistent control read length
2
inconsistent control run_type
assembly!
GRCh38
biosample_type!
tissue
BIOSAMPLE
ASSAY
137 results
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ChIP-seq
total RNA-seq
Hi-C
STARR-seq
pCHi-C
RRBS
whole genome sequencing assay
cell line
HepG2
117
9
2
2
2
1
primary cell
hepatocyte
1
1
endothelial cell of hepatic sinusoid
1
in vitro differentiated cells
hepatocyte
1
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