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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
73
ChIP-seq
30
total RNA-seq
20
ATAC-seq
3
Hi-C
3
WGBS
3
pCHi-C
2
STARR-seq
1
DNase-seq
1
RRBS
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
73
DNA binding
31
Transcription
21
DNA accessibility
4
DNA methylation
3
3D chromatin structure
1
DNA sequencing
Target of assay
31
control
31
histone
31
histone modification
18
narrow histone mark
13
broad histone mark
11
transcription factor
1
RNA binding protein
Date released
40
May, 2022
32
August, 2021
32
May, 2020
26
August, 2017
3
July, 2019
2
February, 2021
2
March, 2020
1
February, 2020
Available data
150
bam
fastq
94
bigWig
74
bed narrowPeak
55
tagAlign
32
bigBed narrowPeak
14
bed broadPeak
14
bigBed broadPeak
12
tsv
3
tar
2
bed bed3+
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
hic
1
csv
1
hdf5
1
vcf
Organism
138
Homo sapiens
Biosample type
102
tissue
33
cell line
3
primary cell
Organ
197
pancreas
154
epithelium
149
kidney
138
liver
127
heart
93
bone element
92
connective tissue
63
brain
55
eye
46
adipose tissue
43
vasculature
42
blood vessel
41
musculature of body
26
limb
20
lung
13
artery
12
nerve
10
vein
9
blood
9
bodily fluid
8
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
138
AMP
Genome assembly (visualization)
235
hg19
GRCh38
Lab
67
AMP-T2D consortium
40
Karen Mohlke, UNC
31
Bing Ren, UCSD
assembly!
GRCh38
files.file_type!
fastq
BIOSAMPLE
ASSAY
138 results
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ChIP-seq
total RNA-seq
ATAC-seq
Hi-C
WGBS
pCHi-C
STARR-seq
DNase-seq
RRBS
single cell RNA-seq
whole genome sequencing assay
tissue
liver
54
20
20
1
2
1
1
right lobe of liver
1
1
1
cell line
HepG2
18
9
1
2
2
1
primary cell
hepatocyte
1
1
endothelial cell of hepatic sinusoid
1
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