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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
36
ATAC-seq
25
ChIP-seq
20
total RNA-seq
11
snATAC-seq
4
Hi-C
4
MeRIP-seq
2
FAIRE-seq
2
RRBS
1
pCHi-C
Assay category
49
DNA accessibility
25
DNA binding
20
Transcription
4
3D chromatin structure
2
DNA methylation
Target of assay
27
control
histone
14
histone modification
8
broad histone mark
6
narrow histone mark
2
nucleotide modification
Date released
24
May, 2022
18
February, 2023
11
October, 2018
10
August, 2017
8
January, 2021
6
March, 2020
4
July, 2018
4
November, 2020
4
September, 2017
3
March, 2019
3
October, 2019
2
August, 2021
2
July, 2019
1
August, 2022
1
February, 2020
1
May, 2019
1
May, 2021
1
November, 2018
1
November, 2019
Available data
46
bam
43
fastq
20
bed narrowPeak
6
txt
4
bigWig
4
tsv
3
bedpe bed3+
3
hic
2
bed bedMethyl
2
bigBed bedMethyl
2
bigBed narrowPeak
2
tagAlign
1
bed broadPeak
1
bedpe
Organism
104
Homo sapiens
Biosample type
154
primary cell
105
tissue
36
cell line
1
in vitro differentiated cells
Organ
134
kidney
121
heart
105
pancreas
95
liver
92
bone element
51
eye
43
brain
35
adipose tissue
35
connective tissue
28
blood vessel
28
vasculature
24
limb
20
lung
20
musculature of body
15
epithelium
12
nerve
11
artery
9
spleen
8
skeleton
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
77
AMP
28
T1D
Genome assembly (visualization)
348
hg19
GRCh38
Lab
51
Kyle Gaulton, UCSD
45
AMP-T2D consortium
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
1
audit script error
assembly!
GRCh38
target.investigated_as!
histone
BIOSAMPLE
ASSAY
105 results
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ATAC-seq
ChIP-seq
total RNA-seq
snATAC-seq
Hi-C
MeRIP-seq
FAIRE-seq
RRBS
pCHi-C
tissue
islet of Langerhans
36
11
18
7
3
4
1
1
pancreas
3
1
4
1
1
1
1
body of pancreas
9
1
endocrine pancreas
2
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