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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
27
ChIP-seq
6
single cell RNA-seq
Hi-C
3
total RNA-seq
1
FAIRE-seq
1
RRBS
1
WGBS
1
pCHi-C
Assay category
27
DNA binding
9
Transcription
2
DNA methylation
1
DNA accessibility
Target of assay
22
control
5
histone
5
histone modification
4
broad histone mark
1
narrow histone mark
Date released
13
October, 2019
11
May, 2019
6
August, 2021
3
February, 2020
2
February, 2021
2
July, 2019
2
November, 2017
1
March, 2020
Available data
29
bam
10
tsv
5
bigWig
2
bed broadPeak
2
bigBed broadPeak
2
fastq
2
tagAlign
1
bed bedMethyl
1
bed narrowPeak
1
bigBed bedMethyl
1
bigBed narrowPeak
1
tar
Organism
40
Homo sapiens
Biosample type
27
tissue
11
primary cell
2
cell line
Organ
303
pancreas
256
liver
222
epithelium
148
kidney
124
heart
117
connective tissue
93
bone element
67
adipose tissue
66
brain
55
eye
40
vasculature
38
blood vessel
37
musculature of body
22
limb
20
lung
15
blood
15
bodily fluid
13
artery
12
nerve
9
spleen
8
embryo
8
skeleton
8
vein
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
40
AMP
Genome assembly (visualization)
GRCh38
160
hg19
Lab
40
AMP-T2D consortium
assembly!
GRCh38
assay_title!
Hi-C
BIOSAMPLE
ASSAY
40 results
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ChIP-seq
single cell RNA-seq
total RNA-seq
FAIRE-seq
RRBS
WGBS
pCHi-C
tissue
aorta
2
4
1
1
tibial artery
5
1
ascending aorta
3
1
thoracic aorta
4
coronary artery
2
1
+ See 1 more…
primary cell
endothelial cell of umbilical vein
7
1
choroid plexus epithelial cell
1
1
brain microvascular endothelial cell
1
cell line
smooth muscle cell of the coronary artery
2
See all biosamples
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