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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
6
single cell RNA-seq
5
Hi-C
3
total RNA-seq
1
RRBS
1
pCHi-C
Assay category
9
Transcription
5
3D chromatin structure
1
DNA methylation
Date released
6
August, 2021
3
February, 2020
3
July, 2019
3
March, 2020
1
October, 2019
Available data
bam
10
tsv
7
bigWig
3
hic
2
bed bed3+
2
bed broadPeak
2
bedpe bed3+
2
bigBed broadPeak
2
fastq
2
hdf5
2
tagAlign
1
bed bedMethyl
1
bed narrowPeak
1
bigBed bedMethyl
1
bigBed narrowPeak
1
tar
Organism
16
Homo sapiens
Biosample type
11
tissue
5
primary cell
Organ
243
pancreas
197
epithelium
135
kidney
110
liver
107
heart
93
bone element
90
connective tissue
54
eye
48
adipose tissue
41
brain
39
musculature of body
20
lung
16
vasculature
15
blood vessel
9
blood
9
bodily fluid
8
limb
8
skeleton
5
gonad
5
ovary
4
artery
2
intestine
2
thymus
2
vein
1
adrenal gland
1
bone marrow
1
embryo
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
nerve
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
16
AMP
Genome assembly (visualization)
GRCh38
6
hg19
Lab
16
AMP-T2D consortium
Audit category:
1
audit script error
assembly!
GRCh38
files.file_type!
bam
BIOSAMPLE
ASSAY
16 results
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single cell RNA-seq
Hi-C
total RNA-seq
RRBS
pCHi-C
tissue
aorta
4
1
1
pulmonary artery
2
ascending aorta
1
coronary artery
1
tibial artery
1
primary cell
endothelial cell of umbilical vein
2
brain microvascular endothelial cell
1
choroid plexus epithelial cell
1
endothelial cell of hepatic sinusoid
1
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