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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
33
ChIP-seq
8
Hi-C
5
RRBS
2
total RNA-seq
1
ATAC-seq
1
FAIRE-seq
1
pCHi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
33
DNA binding
8
3D chromatin structure
5
DNA methylation
3
DNA accessibility
3
Transcription
Target of assay
25
histone
25
histone modification
16
broad histone mark
9
narrow histone mark
8
control
Date released
26
August, 2017
9
October, 2019
5
July, 2019
4
March, 2020
2
February, 2020
2
June, 2019
2
May, 2019
2
May, 2022
1
January, 2018
Available data
18
bigWig
15
bed broadPeak
15
bed narrowPeak
15
tagAlign
12
bam
4
hic
3
bed bedMethyl
3
bedpe bed3+
3
bigBed bedMethyl
3
tsv
2
bigBed broadPeak
2
bigBed narrowPeak
2
fastq
1
bed bed3+
1
tar
1
txt
Organism
53
Homo sapiens
Biosample type
40
tissue
13
primary cell
Organ
311
pancreas
260
liver
230
epithelium
149
kidney
127
heart
118
connective tissue
93
bone element
69
brain
67
adipose tissue
55
eye
45
vasculature
43
blood vessel
43
musculature of body
26
limb
20
lung
15
blood
15
bodily fluid
13
artery
12
nerve
10
vein
9
spleen
8
embryo
8
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
53
AMP
Genome assembly (visualization)
90
hg19
GRCh38
Lab
53
AMP-T2D consortium
Audit category:
2
audit script error
1
inconsistent ontology term
assembly!
GRCh38
BIOSAMPLE
ASSAY
53 results
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ChIP-seq
Hi-C
RRBS
total RNA-seq
ATAC-seq
FAIRE-seq
pCHi-C
single cell RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
22
4
1
1
1
gastrocnemius medialis
4
1
psoas muscle
2
1
muscle of leg
2
left ventricle myocardium
1
primary cell
endothelial cell of umbilical vein
7
2
1
skeletal muscle cell
1
1
skeletal muscle satellite cell
1
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