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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
24
ChIP-seq
4
WGBS
3
ATAC-seq
2
pCHi-C
2
total RNA-seq
1
RNA microarray
Assay category
24
DNA binding
4
DNA methylation
3
DNA accessibility
2
Transcription
Target of assay
histone
31
histone modification
24
control
20
broad histone mark
11
narrow histone mark
Date released
18
October, 2018
10
August, 2017
2
February, 2020
1
August, 2018
1
August, 2021
1
February, 2023
1
January, 2018
1
March, 2020
1
October, 2019
Available data
21
fastq
19
bam
3
tsv
2
bigWig
1
bed narrowPeak
1
bedpe bed3+
1
bigBed narrowPeak
1
tagAlign
Organism
35
Homo sapiens
Biosample type
35
tissue
1
in vitro differentiated cells
Organ
296
pancreas
225
epithelium
225
liver
147
kidney
126
heart
93
bone element
74
connective tissue
53
eye
50
brain
40
vasculature
38
blood vessel
36
adipose tissue
24
limb
23
musculature of body
20
lung
15
blood
15
bodily fluid
13
artery
12
nerve
9
spleen
8
skeleton
7
embryo
5
vein
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
36
AMP
Genome assembly (visualization)
424
hg19
GRCh38
Lab
36
AMP-T2D consortium
assembly!
GRCh38
target.investigated_as!
histone
assay_title!
STARR-seq
BIOSAMPLE
ASSAY
36 results
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ChIP-seq
WGBS
ATAC-seq
pCHi-C
total RNA-seq
RNA microarray
tissue
subcutaneous adipose tissue
10
1
1
omental fat pad
8
1
subcutaneous abdominal adipose tissue
5
3
adipose tissue
1
1
3
1
in vitro differentiated cells
white fat cell
1
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