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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
21
ATAC-seq
21
ChIP-seq
17
pCHi-C
9
total RNA-seq
1
DNAme array
Assay category
21
DNA accessibility
21
DNA binding
9
Transcription
1
DNA methylation
Target of assay
histone
54
histone modification
32
broad histone mark
22
narrow histone mark
12
transcription factor
9
control
5
RNA binding protein
Date released
210
August, 2021
May, 2022
170
February, 2023
147
February, 2021
126
May, 2020
111
November, 2017
80
October, 2019
69
May, 2021
66
August, 2017
56
September, 2020
48
March, 2020
47
September, 2023
29
July, 2019
29
October, 2018
25
February, 2020
23
May, 2019
19
April, 2020
16
December, 2017
16
January, 2021
15
April, 2019
10
November, 2020
9
November, 2018
8
February, 2018
8
January, 2018
8
June, 2019
5
December, 2018
5
December, 2019
4
January, 2019
4
July, 2018
4
March, 2023
4
November, 2019
4
October, 2022
4
September, 2017
3
March, 2019
3
May, 2023
3
October, 2017
1
August, 2018
1
August, 2022
1
September, 2018
Available data
10
bigWig
2
bed bed3+
1
bam
1
tagAlign
Organism
69
Homo sapiens
Biosample type
28
in vitro differentiated cells
23
primary cell
16
cell line
2
tissue
Organ
18
pancreas
17
epithelium
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
52
AMP
17
T1D
Genome assembly (visualization)
200
hg19
GRCh38
Lab
50
Kyle Gaulton, UCSD
19
AMP-T2D consortium
Audit category:
17
inconsistent ontology term
assembly!
GRCh38
target.investigated_as!
histone
month_released!
May, 2022
BIOSAMPLE
ASSAY
69 results
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ATAC-seq
ChIP-seq
pCHi-C
total RNA-seq
DNAme array
in vitro differentiated cells
embryonic stem cell
5
17
5
pancreatic PP cell
1
primary cell
CD8-positive, alpha-beta T cell
3
1
2
monocyte
1
1
1
CD4-positive, alpha-beta T cell
2
B cell
1
activated CD4-positive, alpha-beta T cell
1
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cell line
EndoC_BH1
16
tissue
pancreas
1
thymus
1
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