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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
13
ChIP-seq
Assay category
13
DNA binding
Target of assay
147
control
79
histone
79
histone modification
65
transcription factor
48
broad histone mark
31
narrow histone mark
13
RNA binding protein
3
nucleotide modification
2
chromatin remodeller
1
recombinant protein
Date released
6
November, 2017
5
May, 2021
1
August, 2017
1
August, 2021
Available data
7
bam
7
fastq
6
bed narrowPeak
6
bigWig
5
bigBed narrowPeak
2
bed broadPeak
2
bigBed broadPeak
1
tar
Organism
13
Homo sapiens
Biosample type
7
cell line
5
in vitro differentiated cells
1
primary cell
tissue
Organ
7
liver
Project
13
AMP
Genome assembly (visualization)
78
hg19
GRCh38
Lab
7
AMP-T2D consortium
5
Kyle Gaulton, UCSD
1
Bing Ren, UCSD
Audit category:
1
missing controlled_by
Audit category:
1
inconsistent control read length
1
inconsistent control run_type
assembly!
GRCh38
biosample_type!
tissue
BIOSAMPLE
ASSAY
13 results
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ChIP-seq
cell line
HepG2
7
in vitro differentiated cells
embryonic stem cell
5
primary cell
skeletal muscle myoblast
1
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