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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1037
total RNA-seq
907
ChIP-seq
260
ATAC-seq
178
DNase-seq
174
single cell RNA-seq
87
RNA microarray
28
snATAC-seq
27
WGBS
25
pCHi-C
16
Hi-C
16
small RNA-seq
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
907
DNA binding
178
DNA accessibility
Target of assay
628
histone modification
627
histone
324
narrow histone mark
303
broad histone mark
185
control
94
transcription factor
28
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
199
October, 2019
178
August, 2017
163
June, 2019
115
May, 2019
82
November, 2017
80
April, 2019
74
October, 2018
50
May, 2020
48
December, 2017
40
May, 2024
19
November, 2018
15
October, 2017
7
December, 2018
7
January, 2019
6
September, 2017
2
March, 2020
Available data
899
bam
792
bigWig
772
bed narrowPeak
554
bigBed narrowPeak
238
tagAlign
230
fastq
211
bed broadPeak
204
bed bed3+
176
bigBed broadPeak
1
tagAlign bed3+
Organism
1078
Homo sapiens
Biosample type
1085
tissue
486
cell line
310
primary cell
199
in vitro differentiated cells
3
stem cell
Organ
236
brain
159
liver
150
heart
124
pancreas
102
limb
95
kidney
78
blood vessel
78
vasculature
76
connective tissue
75
adipose tissue
61
musculature of body
37
nerve
32
artery
21
spleen
18
ureter
5
eye
4
gonad
4
ovary
1
lymph node
1
pituitary gland
Project
1083
AMP
2
T1D
Genome assembly (visualization)
767
GRCh38
690
hg19
Lab
1045
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
Audit category:
27
inconsistent control
3
inconsistent ontology term
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
assembly!
hg18
BIOSAMPLE
ASSAY
1085 results
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ChIP-seq
DNase-seq
tissue
liver
145
2
islet of Langerhans
71
1
left cardiac atrium
40
1
kidney
27
13
body of pancreas
35
4
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