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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
131
total RNA-seq
129
ChIP-seq
103
ATAC-seq
70
single cell RNA-seq
47
WGBS
19
DNase-seq
8
Hi-C
6
MeRIP-seq
6
RRBS
2
Capture-C
1
CRISPR genome editing followed by sgRNA sequencing
1
FAIRE-seq
1
RNA microarray
Assay category
129
DNA binding
47
DNA methylation
Target of assay
93
histone
93
histone modification
49
narrow histone mark
44
broad histone mark
27
control
9
transcription factor
8
RNA binding protein
1
chromatin remodeller
Date released
41
May, 2022
26
August, 2017
24
October, 2019
21
September, 2018
19
December, 2017
13
November, 2019
6
February, 2021
6
June, 2019
6
November, 2017
5
May, 2019
4
August, 2021
4
May, 2021
1
March, 2020
Available data
129
bam
101
bigWig
97
bed narrowPeak
78
fastq
41
zippedFastqFolder
36
bigBed narrowPeak
7
tagAlign
6
bed broadPeak
6
bigBed broadPeak
6
tsv
3
bed bed3+
Organism
176
Homo sapiens
Biosample type
139
primary cell
22
in vitro differentiated cells
15
cell line
Organ
557
liver
269
pancreas
218
brain
176
epithelium
159
connective tissue
104
vasculature
102
heart
101
blood vessel
79
adipose tissue
67
limb
60
blood
60
bodily fluid
52
kidney
40
musculature of body
35
nerve
34
artery
22
embryo
22
spleen
17
vein
5
eye
4
gonad
4
ovary
1
lymph node
1
pituitary gland
Project
127
AMP
47
HPAP
2
T1D
Genome assembly (visualization)
101
hg19
97
GRCh38
Lab
129
AMP-T2D consortium
47
Klaus Kaestner, Upenn
Audit category:
25
inconsistent ontology term
Audit category:
21
missing controlled_by
Audit category:
5
inconsistent control read length
assembly!
hg18
BIOSAMPLE
ASSAY
176 results
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ChIP-seq
WGBS
primary cell
pancreatic alpha cell
13
31
pancreatic beta cell
13
16
endothelial cell of umbilical vein
17
pancreatic ductal cell
13
epithelial cell of proximal tubule
10
+ See 6 more…
in vitro differentiated cells
hepatocyte
15
Hepatic endoderm
4
pancreatic PP cell
3
cell line
EndoC_BH1
15
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