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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
47
ChIP-seq
17
total RNA-seq
4
ATAC-seq
4
small RNA-seq
3
Hi-C
3
single cell RNA-seq
2
RRBS
2
pCHi-C
Assay category
47
DNA binding
24
Transcription
4
DNA accessibility
3
3D chromatin structure
2
DNA methylation
Target of assay
31
control
19
histone
19
histone modification
11
narrow histone mark
8
broad histone mark
Date released
27
November, 2017
17
July, 2019
12
February, 2020
11
October, 2019
9
October, 2017
3
May, 2019
2
March, 2020
1
February, 2023
Available data
240
bam
219
bigWig
bed narrowPeak
124
bigBed narrowPeak
114
tagAlign
45
bed broadPeak
38
bigBed broadPeak
35
bed bed3+
26
tsv
17
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
tagAlign bed3+
Organism
82
Homo sapiens
Biosample type
72
tissue
10
primary cell
Organ
711
pancreas
592
connective tissue
466
adipose tissue
373
epithelium
349
liver
202
heart
168
kidney
151
bone element
103
vasculature
101
blood vessel
82
brain
67
artery
36
musculature of body
30
limb
28
eye
21
embryo
20
lung
16
nerve
15
blood
15
bodily fluid
11
spleen
9
vein
8
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
82
AMP
Genome assembly (visualization)
23
hg19
16
GRCh38
Lab
82
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
missing controlled_by
assembly!
hg18
audit.NOT_COMPLIANT.category!
missing controlled_by
assay_title!
snDrop-seq
files.file_type!
bed narrowPeak
BIOSAMPLE
ASSAY
82 results
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ChIP-seq
total RNA-seq
ATAC-seq
small RNA-seq
Hi-C
single cell RNA-seq
RRBS
pCHi-C
tissue
brain
8
1
1
1
cingulate gyrus
7
layer of hippocampus
6
cerebellum (Hemisphere)
2
1
1
1
substantia nigra
4
1
+ See 24 more…
primary cell
astrocyte of the cerebellum
1
1
brain microvascular endothelial cell
1
1
cerebellar granule cell
2
choroid plexus epithelial cell
1
1
Purkinje cell
1
+ See 1 more…
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