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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
61
ChIP-seq
6
ATAC-seq
6
WGBS
2
DNase-seq
2
pCHi-C
1
RNA microarray
Assay category
Transcription
61
DNA binding
8
DNA accessibility
6
DNA methylation
Target of assay
32
histone
32
histone modification
24
control
20
broad histone mark
12
narrow histone mark
5
RNA binding protein
5
transcription factor
Date released
45
August, 2017
23
October, 2018
1
August, 2018
1
August, 2021
1
February, 2023
1
January, 2018
1
June, 2019
1
March, 2020
1
November, 2018
1
November, 2019
1
October, 2017
1
October, 2019
Available data
32
bam
32
fastq
15
bigWig
13
bed narrowPeak
10
bigBed narrowPeak
8
tagAlign
3
bed broadPeak
2
bed bed3+
2
bed bedMethyl
2
bigBed bedMethyl
2
bigBed broadPeak
1
bedpe bed3+
1
tsv
Organism
77
Homo sapiens
Biosample type
77
tissue
1
in vitro differentiated cells
Organ
585
liver
413
pancreas
302
epithelium
258
brain
229
kidney
187
heart
186
connective tissue
169
vasculature
163
blood vessel
115
limb
97
bone element
87
musculature of body
83
artery
78
adipose tissue
69
blood
69
bodily fluid
42
eye
38
nerve
25
spleen
22
vein
21
embryo
18
ureter
12
skeleton
11
lung
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
78
AMP
Genome assembly (visualization)
15
hg19
13
GRCh38
Lab
78
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
missing controlled_by
assembly!
hg18
audit.NOT_COMPLIANT.category!
missing controlled_by
assay_slims!
Transcription
BIOSAMPLE
ASSAY
78 results
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ChIP-seq
ATAC-seq
WGBS
DNase-seq
pCHi-C
RNA microarray
tissue
subcutaneous abdominal adipose tissue
36
3
omental fat pad
11
1
2
subcutaneous adipose tissue
12
1
1
adipose tissue
2
3
3
1
adipose tissue(adipose white tissue)
1
in vitro differentiated cells
white fat cell
1
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