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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
38
ChIP-seq
Assay category
38
DNA binding
Target of assay
29
histone
29
histone modification
23
transcription factor
15
narrow histone mark
broad histone mark
12
chromatin remodeller
5
RNA binding protein
1
recombinant protein
Date released
13
August, 2017
12
November, 2017
6
December, 2017
5
November, 2018
1
February, 2018
1
October, 2018
Available data
38
bam
38
bed narrowPeak
38
bigWig
38
fastq
21
bigBed narrowPeak
6
bed broadPeak
6
bigBed broadPeak
5
bed bed3+
4
tagAlign
Organism
38
Homo sapiens
Biosample type
17
cell line
12
in vitro differentiated cells
5
primary cell
3
tissue
1
stem cell
Organ
18
liver
6
connective tissue
6
pancreas
5
epithelium
2
embryo
Project
38
AMP
Genome assembly (visualization)
41
hg19
38
GRCh38
Lab
38
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
4
missing controlled_by
Audit category:
38
inconsistent control read length
7
inconsistent control run_type
2
inconsistent assembly
assembly!
hg18
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
38 results
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ChIP-seq
cell line
HepG2
17
in vitro differentiated cells
adipocyte
6
definitive endodermal cell
2
Hepatic endoderm
1
Posterior foregut
1
pancreatic endoderm
1
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primary cell
pancreatic alpha cell
2
pancreatic beta cell
2
skeletal muscle myoblast
1
tissue
body of pancreas
1
liver
1
pancreas
1
stem cell
hESC
1
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