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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
28
ChIP-seq
Assay category
28
DNA binding
Target of assay
21
histone
21
histone modification
19
transcription factor
broad histone mark
11
chromatin remodeller
9
narrow histone mark
6
RNA binding protein
1
recombinant protein
Date released
15
November, 2017
August, 2017
6
December, 2017
5
November, 2018
1
February, 2018
1
October, 2018
Available data
28
bam
28
bigWig
28
fastq
27
bed narrowPeak
20
bigBed narrowPeak
7
bed broadPeak
7
bigBed broadPeak
5
tagAlign
1
bed bed3+
Organism
28
Homo sapiens
Biosample type
20
cell line
6
in vitro differentiated cells
1
stem cell
1
tissue
Organ
20
liver
2
embryo
1
epithelium
1
pancreas
Project
28
AMP
Genome assembly (visualization)
28
hg19
25
GRCh38
Lab
28
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
5
missing controlled_by
Audit category:
28
inconsistent control read length
8
inconsistent control run_type
1
inconsistent assembly
assembly!
hg18
target.investigated_as!
broad histone mark
month_released!
August, 2017
BIOSAMPLE
ASSAY
28 results
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ChIP-seq
cell line
HepG2
20
in vitro differentiated cells
definitive endodermal cell
2
Hepatic endoderm
1
Posterior foregut
1
pancreatic endoderm
1
primitive gut cell
1
stem cell
hESC
1
tissue
body of pancreas
1
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