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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
18
snATAC-seq
16
pCHi-C
11
ATAC-seq
7
total RNA-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
Assay category
29
DNA accessibility
7
Transcription
Date released
23
February, 2023
16
January, 2021
16
May, 2021
2
March, 2020
Organism
57
Homo sapiens
Biosample type
29
tissue
23
primary cell
5
cell line
Organ
28
pancreas
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
1125
AMP
321
HPAP
57
T1D
47
KPMP
19
LungMap
4
community
1
ITG
Genome assembly (visualization)
178
GRCh38
hg19
Lab
55
Kyle Gaulton, UCSD
2
AMP-T2D consortium
Audit category:
inconsistent ontology term
assembly!
hg18
hg19
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
57 results
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snATAC-seq
pCHi-C
ATAC-seq
total RNA-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
tissue
islet of Langerhans
6
11
7
pancreas
4
thymus
1
primary cell
peripheral blood mononuclear cell
8
CD4-positive, alpha-beta T cell
2
B cell
1
CD8-positive, alpha-beta T cell
1
activated CD4-positive, alpha-beta T cell
1
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cell line
EndoC_BH1
3
2
See all biosamples