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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
200
ATAC-seq
195
ChIP-seq
187
single cell RNA-seq
151
total RNA-seq
48
snATAC-seq
47
WGBS
DNase-seq
10
Hi-C
10
RRBS
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
1
pCHi-C
Assay category
340
Transcription
249
DNA accessibility
195
DNA binding
58
DNA methylation
10
3D chromatin structure
Target of assay
153
histone
153
histone modification
78
broad histone mark
75
narrow histone mark
35
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
134
May, 2022
102
May, 2020
88
February, 2023
73
September, 2018
59
September, 2020
57
August, 2017
55
May, 2021
48
February, 2021
48
July, 2018
43
April, 2018
31
July, 2019
31
June, 2019
30
October, 2019
9
November, 2017
7
August, 2020
5
December, 2019
5
May, 2019
5
November, 2020
5
September, 2017
4
August, 2021
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
408
fastq
404
bigWig
400
bam
182
bed narrowPeak
174
tsv
153
zippedFastqFolder
80
bigBed narrowPeak
21
bed broadPeak
21
bigBed broadPeak
16
tagAlign
10
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
853
Homo sapiens
Biosample type
2568
tissue
853
primary cell
651
cell line
389
in vitro differentiated cells
9
stem cell
Organ
388
epithelium
346
pancreas
32
connective tissue
31
vasculature
27
blood vessel
24
kidney
20
vein
16
brain
13
musculature of body
12
liver
10
heart
4
eye
2
adipose tissue
2
artery
1
pericardium
Project
528
AMP
324
HPAP
T1D
1
ITG
Genome assembly (visualization)
426
hg19
329
GRCh38
Lab
493
AMP-T2D consortium
324
Klaus Kaestner, Upenn
35
Kyle Gaulton, UCSD
1
ITG
Audit category:
46
inconsistent ontology term
31
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
assembly!
hg18
assay_title!
DNase-seq
award.project!
T1D
BIOSAMPLE
ASSAY
853 results
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ATAC-seq
ChIP-seq
single cell RNA-seq
total RNA-seq
snATAC-seq
WGBS
Hi-C
RRBS
small RNA-seq
DNAme array
FAIRE-seq
pCHi-C
primary cell
pancreatic alpha cell
35
13
12
52
31
1
Langerhans cell
85
48
pancreatic beta cell
23
13
12
21
16
1
exocrine cell
39
CD8-positive, alpha-beta T cell
2
33
2
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