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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
227
ChIP-seq
148
total RNA-seq
93
single cell RNA-seq
74
ATAC-seq
26
DNase-seq
4
Hi-C
2
small RNA-seq
1
FAIRE-seq
Assay category
243
Transcription
227
DNA binding
101
DNA accessibility
4
3D chromatin structure
Target of assay
213
histone
213
histone modification
110
broad histone mark
103
narrow histone mark
10
control
7
RNA binding protein
7
transcription factor
1
chromatin remodeller
Date released
171
May, 2021
82
May, 2020
72
September, 2018
46
August, 2017
43
April, 2018
42
July, 2018
26
June, 2019
23
October, 2019
22
July, 2019
9
November, 2017
7
August, 2020
5
December, 2019
5
November, 2020
5
September, 2017
3
August, 2018
3
August, 2021
3
September, 2020
2
February, 2021
2
June, 2018
2
May, 2019
2
October, 2018
Available data
575
bigWig
564
bam
402
fastq
270
bed narrowPeak
253
tsv
153
zippedFastqFolder
100
tagAlign
86
bigBed narrowPeak
46
bed broadPeak
46
bigBed broadPeak
34
bed bed3+
8
bed bedMethyl
8
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
575
Homo sapiens
Biosample type
1769
tissue
575
primary cell
464
cell line
162
in vitro differentiated cells
2
stem cell
Organ
225
epithelium
187
pancreas
28
vasculature
24
blood vessel
23
kidney
22
connective tissue
20
brain
15
vein
11
liver
6
heart
4
musculature of body
3
eye
2
adipose tissue
2
artery
1
pericardium
Project
389
AMP
176
T1D
10
HPAP
Genome assembly (visualization)
558
hg19
485
GRCh38
Lab
354
AMP-T2D consortium
211
Kyle Gaulton, UCSD
10
Klaus Kaestner, Upenn
Audit category:
inconsistent ontology term
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
assembly!
hg18
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
575 results
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ChIP-seq
total RNA-seq
single cell RNA-seq
ATAC-seq
DNase-seq
Hi-C
small RNA-seq
FAIRE-seq
primary cell
monocyte
84
53
2
pancreatic alpha cell
7
10
12
13
CD8-positive, alpha-beta T cell
33
4
2
pancreatic beta cell
7
10
12
10
pancreatic ductal cell
13
4
10
4
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