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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
253
ChIP-seq
233
total RNA-seq
186
ATAC-seq
176
single cell RNA-seq
56
snATAC-seq
47
WGBS
23
DNase-seq
14
pCHi-C
9
Hi-C
8
RRBS
1
DNAme array
1
FAIRE-seq
1
small RNA-seq
Assay category
410
Transcription
266
DNA accessibility
253
DNA binding
56
DNA methylation
9
3D chromatin structure
Target of assay
220
histone
220
histone modification
114
broad histone mark
106
narrow histone mark
29
control
7
RNA binding protein
7
transcription factor
1
chromatin remodeller
Date released
204
May, 2021
139
May, 2020
134
May, 2022
82
February, 2023
73
September, 2018
59
August, 2017
59
September, 2020
45
February, 2021
41
April, 2018
40
July, 2018
32
October, 2019
25
June, 2019
22
July, 2019
9
November, 2017
8
January, 2021
7
August, 2020
5
December, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
October, 2022
2
June, 2018
2
May, 2019
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
553
bigWig
540
bam
399
fastq
263
bed narrowPeak
238
tsv
153
zippedFastqFolder
100
tagAlign
81
bigBed narrowPeak
41
bed broadPeak
41
bigBed broadPeak
27
bed bed3+
8
bed bedMethyl
8
bigBed bedMethyl
6
hic
4
bedpe bed3+
3
cool
3
hdf5
2
csv
1
tar
Organism
1008
Homo sapiens
Biosample type
2140
tissue
1008
primary cell
570
cell line
182
in vitro differentiated cells
8
stem cell
Organ
396
epithelium
341
pancreas
36
vasculature
31
blood vessel
28
kidney
connective tissue
22
vein
21
brain
13
liver
8
blood
8
bodily fluid
7
heart
6
musculature of body
5
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
485
AMP
324
HPAP
198
T1D
1
ITG
Genome assembly (visualization)
563
hg19
478
GRCh38
Lab
450
AMP-T2D consortium
324
Klaus Kaestner, Upenn
233
Kyle Gaulton, UCSD
1
ITG
Audit category:
inconsistent ontology term
31
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
assembly!
hg18
audit.ERROR.category!
inconsistent ontology term
organ_slims!
connective tissue
BIOSAMPLE
ASSAY
1008 results
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ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
WGBS
DNase-seq
pCHi-C
Hi-C
RRBS
DNAme array
FAIRE-seq
small RNA-seq
primary cell
monocyte
85
54
15
1
1
pancreatic alpha cell
13
52
35
12
31
1
Langerhans cell
85
48
pancreatic beta cell
13
21
23
12
16
1
CD8-positive, alpha-beta T cell
33
4
2
1
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