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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
222
ChIP-seq
39
ATAC-seq
29
DNase-seq
1
FAIRE-seq
Assay category
222
DNA binding
69
DNA accessibility
Target of assay
213
histone
213
histone modification
110
broad histone mark
103
narrow histone mark
9
RNA binding protein
9
transcription factor
1
chromatin remodeller
Date released
127
May, 2021
47
June, 2019
46
September, 2018
33
August, 2017
21
October, 2019
6
November, 2017
5
September, 2017
May, 2019
3
August, 2021
2
November, 2020
1
February, 2021
Available data
609
bigWig
604
bam
409
fastq
291
bed narrowPeak
270
tsv
153
zippedFastqFolder
105
bigBed narrowPeak
100
tagAlign
49
bed broadPeak
49
bigBed broadPeak
37
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
291
Homo sapiens
Biosample type
891
tissue
404
cell line
291
primary cell
132
in vitro differentiated cells
2
stem cell
Organ
102
epithelium
68
pancreas
21
vasculature
18
kidney
17
blood vessel
17
connective tissue
13
vein
11
brain
9
musculature of body
6
heart
6
liver
3
eye
Project
207
AMP
84
T1D
Genome assembly (visualization)
284
hg19
257
GRCh38
Lab
177
AMP-T2D consortium
114
Kyle Gaulton, UCSD
Audit category:
23
inconsistent ontology term
Audit category:
32
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
assembly!
hg18
month_released!
May, 2019
BIOSAMPLE
ASSAY
291 results
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ChIP-seq
ATAC-seq
DNase-seq
FAIRE-seq
primary cell
monocyte
84
13
CD8-positive, alpha-beta T cell
30
pancreatic ductal cell
13
4
skeletal muscle myoblast
14
2
pancreatic beta cell
7
7
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