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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
257
ChIP-seq
247
total RNA-seq
200
ATAC-seq
187
single cell RNA-seq
56
snATAC-seq
47
WGBS
29
DNase-seq
17
pCHi-C
10
RRBS
8
Hi-C
2
small RNA-seq
1
DNAme array
Assay category
436
Transcription
285
DNA accessibility
257
DNA binding
58
DNA methylation
8
3D chromatin structure
Target of assay
219
histone
219
histone modification
111
broad histone mark
108
narrow histone mark
32
control
9
RNA binding protein
9
transcription factor
1
chromatin remodeller
Date released
206
May, 2021
147
May, 2020
134
May, 2022
88
February, 2023
73
September, 2018
59
August, 2017
59
September, 2020
55
June, 2019
48
February, 2021
48
July, 2018
43
April, 2018
31
July, 2019
13
October, 2019
9
November, 2017
8
January, 2021
7
August, 2020
6
November, 2020
5
December, 2019
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2023
1
November, 2018
Available data
594
bigWig
584
bam
409
fastq
278
bed narrowPeak
270
tsv
153
zippedFastqFolder
100
tagAlign
92
bigBed narrowPeak
45
bed broadPeak
45
bigBed broadPeak
35
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
4
hdf5
4
hic
3
bedpe bed3+
3
cool
2
csv
1
bed bed3
Organism
1061
Homo sapiens
Biosample type
2662
tissue
1061
primary cell
662
cell line
390
in vitro differentiated cells
9
stem cell
Organ
401
epithelium
346
pancreas
39
connective tissue
37
vasculature
31
blood vessel
31
kidney
vein
21
brain
14
liver
14
musculature of body
13
heart
8
blood
8
bodily fluid
5
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
532
AMP
324
HPAP
204
T1D
1
ITG
Genome assembly (visualization)
607
hg19
520
GRCh38
Lab
497
AMP-T2D consortium
324
Klaus Kaestner, Upenn
239
Kyle Gaulton, UCSD
1
ITG
Audit category:
51
inconsistent ontology term
30
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
assembly!
hg18
month_released!
May, 2019
organ_slims!
vein
BIOSAMPLE
ASSAY
1061 results
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ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
WGBS
DNase-seq
pCHi-C
RRBS
Hi-C
small RNA-seq
DNAme array
primary cell
monocyte
85
54
15
1
1
pancreatic alpha cell
13
52
35
12
31
1
Langerhans cell
85
48
pancreatic beta cell
13
21
23
12
16
1
CD8-positive, alpha-beta T cell
33
4
2
1
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