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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
282
ChIP-seq
Assay category
438
Transcription
288
DNA accessibility
282
DNA binding
58
DNA methylation
10
3D chromatin structure
Target of assay
239
histone
239
histone modification
123
broad histone mark
116
narrow histone mark
33
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
121
May, 2021
53
August, 2017
32
September, 2018
31
June, 2019
24
October, 2019
9
November, 2017
5
May, 2019
4
August, 2021
3
December, 2017
Available data
249
bigWig
245
bam
228
bed narrowPeak
100
tagAlign
97
fastq
57
bigBed narrowPeak
21
bed broadPeak
21
bigBed broadPeak
6
bed bed3+
Organism
282
Homo sapiens
Biosample type
907
tissue
484
cell line
279
primary cell
198
in vitro differentiated cells
3
stem cell
Organ
92
epithelium
70
pancreas
23
vasculature
20
blood vessel
17
vein
15
kidney
12
connective tissue
10
musculature of body
9
brain
5
heart
4
liver
3
eye
Project
198
AMP
84
T1D
Genome assembly (visualization)
250
hg19
210
GRCh38
Lab
165
AMP-T2D consortium
117
Kyle Gaulton, UCSD
Audit category:
25
inconsistent ontology term
Audit category:
44
missing controlled_by
Audit category:
7
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
assembly!
hg18
BIOSAMPLE
ASSAY
282 results
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ChIP-seq
primary cell
monocyte
85
CD8-positive, alpha-beta T cell
33
pancreatic endocrine cell
23
endothelial cell of umbilical vein
17
skeletal muscle myoblast
15
+ See 18 more…
stem cell
hESC
3
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