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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
476
ChIP-seq
160
total RNA-seq
5
WGBS
3
ATAC-seq
3
Hi-C
3
pCHi-C
3
small RNA-seq
2
RRBS
1
DNase-seq
1
single cell RNA-seq
Assay category
476
DNA binding
164
Transcription
7
DNA methylation
4
DNA accessibility
3
3D chromatin structure
Target of assay
283
transcription factor
104
control
86
histone modification
85
histone
82
recombinant protein
53
RNA binding protein
52
narrow histone mark
33
broad histone mark
19
chromatin remodeller
1
other context
1
other post-translational modification
Date released
257
November, 2017
194
May, 2020
63
December, 2017
54
August, 2017
50
November, 2018
10
July, 2019
7
October, 2019
5
December, 2019
5
January, 2019
4
August, 2021
3
February, 2021
3
March, 2020
1
December, 2018
1
February, 2020
Available data
681
bam
588
bigWig
465
fastq
407
bed narrowPeak
358
bigBed narrowPeak
165
tsv
86
tagAlign
bed broadPeak
63
bigBed broadPeak
13
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
1
bed bed3
1
bedpe bed3+
1
csv
1
hdf5
1
hic
Organism
657
Homo sapiens
Biosample type
318
tissue
312
cell line
15
in vitro differentiated cells
12
primary cell
Organ
706
pancreas
669
connective tissue
657
liver
488
adipose tissue
344
epithelium
323
heart
239
brain
219
vasculature
217
blood vessel
158
bone element
137
artery
86
limb
85
kidney
61
blood
61
bodily fluid
57
eye
50
musculature of body
41
nerve
36
embryo
24
spleen
18
vein
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
1
adrenal gland
1
esophagus
1
large intestine
1
lung
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
657
AMP
Genome assembly (visualization)
527
hg19
482
GRCh38
Lab
657
AMP-T2D consortium
40
Karen Mohlke, UNC
31
Bing Ren, UCSD
Audit category:
27
inconsistent control
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
13
missing controlled_by
Audit category:
14
inconsistent control read length
8
inconsistent control run_type
assembly!
hg18
files.file_type!
bed broadPeak
BIOSAMPLE
ASSAY
657 results
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Clear Filters
ChIP-seq
total RNA-seq
WGBS
ATAC-seq
Hi-C
pCHi-C
small RNA-seq
RRBS
DNase-seq
single cell RNA-seq
tissue
liver
145
147
3
1
1
1
1
1
right lobe of liver
10
3
1
1
2
1
cell line
HepG2
302
5
1
1
1
2
in vitro differentiated cells
hepatocyte
15
primary cell
hepatocyte
4
5
1
Liver fetal (hepatocyte)
1
endothelial cell of hepatic sinusoid
1
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