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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
406
ChIP-seq
7
WGBS
1
FAIRE-seq
1
single cell RNA-seq
Assay category
406
DNA binding
7
DNA methylation
1
DNA accessibility
1
Transcription
Target of assay
261
transcription factor
82
recombinant protein
77
control
65
histone
65
histone modification
51
RNA binding protein
40
broad histone mark
25
narrow histone mark
18
chromatin remodeller
4
other context
4
other post-translational modification
Date released
715
February, 2021
399
May, 2021
370
August, 2017
341
May, 2020
336
November, 2017
319
August, 2021
305
October, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
80
April, 2019
79
November, 2018
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
31
June, 2019
30
January, 2019
25
February, 2020
19
April, 2020
19
October, 2017
16
January, 2021
15
May, 2023
15
November, 2020
11
September, 2017
10
December, 2019
7
August, 2020
5
March, 2023
4
August, 2018
4
March, 2019
4
October, 2022
3
January, 2018
3
June, 2018
1
August, 2022
Available data
479
bam
414
bigWig
412
fastq
386
bed narrowPeak
385
bigBed narrowPeak
bed broadPeak
78
tagAlign
73
bigBed broadPeak
9
bed bed3+
7
bed bedMethyl
7
bigBed bedMethyl
3
tar
1
csv
Organism
415
Homo sapiens
Biosample type
318
cell line
93
tissue
4
primary cell
Organ
307
liver
79
brain
15
blood
15
bodily fluid
8
spleen
5
pancreas
2
epithelium
2
vasculature
1
blood vessel
Project
415
AMP
Genome assembly (visualization)
295
GRCh38
273
hg19
Lab
415
AMP-T2D consortium
Audit category:
13
missing controlled_by
Audit category:
13
inconsistent control read length
8
inconsistent control run_type
assembly!
hg18
files.file_type!
bed broadPeak
BIOSAMPLE
ASSAY
415 results
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Clear Filters
ChIP-seq
WGBS
FAIRE-seq
single cell RNA-seq
cell line
HepG2
302
1
GM12878
15
tissue
layer of hippocampus
22
caudate nucleus
14
substantia nigra
14
cingulate gyrus
12
middle frontal area 46
12
+ See 5 more…
primary cell
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
choroid plexus epithelial cell
1
pancreatic cell
1
See all biosamples
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