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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
107
single cell RNA-seq
105
total RNA-seq
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
216
Transcription
99
DNA accessibility
88
DNA binding
41
DNA methylation
4
3D chromatin structure
Date released
51
May, 2021
47
September, 2023
45
May, 2020
33
May, 2022
18
September, 2020
9
April, 2020
5
February, 2023
4
March, 2020
4
March, 2023
Available data
fastq
98
bam
98
bigWig
98
tsv
52
zippedFastqFolder
Organism
212
Homo sapiens
Biosample type
147
primary cell
63
tissue
4
cell line
2
stem cell
Organ
47
kidney
9
lung
9
pancreas
2
epithelium
Project
AMP
105
T1D
51
HPAP
47
KPMP
9
LungMap
4
community
Genome assembly (visualization)
98
GRCh38
98
hg19
Lab
101
Kyle Gaulton, UCSD
51
Klaus Kaestner, Upenn
47
KPMP
9
Xin Sun, UCSD
4
AMP-T2D consortium
4
Anna Gloyn, Oxford
Audit category:
6
inconsistent ontology term
assembly!
hg18
files.file_type!
fastq
award.project!
AMP
BIOSAMPLE
ASSAY
216 results
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single cell RNA-seq
total RNA-seq
CRISPR RNA-seq
CRISPRi RNA-seq
shRNA RNA-seq
siRNA RNA-seq
primary cell
monocyte
53
Langerhans cell
51
B cell
2
CD8-positive, alpha-beta T cell
2
T follicular helper cell
2
+ See 21 more…
tissue
kidney
47
lung
9
islet of Langerhans
7
cell line
EndoC-BH1
1
1
EndoC_BH1
2
stem cell
SB Ad3.1
1
1
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