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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
159
ChIP-seq
30
DNase-seq
5
total RNA-seq
4
small RNA-seq
3
single cell RNA-seq
1
ATAC-seq
Assay category
159
DNA binding
31
DNA accessibility
12
Transcription
Target of assay
159
histone
159
histone modification
103
narrow histone mark
56
broad histone mark
3
control
Date released
78
October, 2019
57
November, 2017
30
June, 2019
25
May, 2019
12
July, 2019
Available data
215
bam
214
bigWig
201
bed narrowPeak
126
bigBed narrowPeak
82
tagAlign
46
bed broadPeak
38
bigBed broadPeak
32
bed bed3+
fastq
12
tsv
1
tagAlign bed3+
Organism
202
Homo sapiens
Biosample type
194
tissue
8
primary cell
Organ
491
connective tissue
401
adipose tissue
278
pancreas
266
heart
205
kidney
202
brain
188
liver
187
vasculature
185
blood vessel
128
artery
113
epithelium
96
limb
66
bone element
53
musculature of body
31
nerve
18
ureter
12
vein
10
embryo
8
skeleton
6
eye
1
pericardium
1
pituitary gland
Project
202
AMP
Genome assembly (visualization)
202
GRCh38
147
hg19
Lab
202
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
assembly!
hg18
files.file_type!
fastq
BIOSAMPLE
ASSAY
202 results
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ChIP-seq
DNase-seq
total RNA-seq
small RNA-seq
single cell RNA-seq
ATAC-seq
tissue
brain
5
12
1
layer of hippocampus
17
temporal lobe
13
1
1
angular gyrus
14
caudate nucleus
12
1
+ See 73 more…
primary cell
cerebellar granule cell
2
Purkinje cell
1
astrocyte of the cerebellum
1
astrocyte of the hippocampus
1
brain microvascular endothelial cell
1
+ See 2 more…
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